| Participating Unit | Software List | Operating Systems |
|---|
| Sydney Imaging (Pre-Clinical, Clinical and Hybrid Theater), Core Research Facility | Windows 10: - MATLAB 2018b, FileZilla, Fiji, ImageJ, Giphi, GIMP, VIM 8.1, Huygens 18.10, Excel and Word 2016, Aliza, DSI-Studio, IVIS, MRIcroGL, mricron, npm, Quench, XNAT: Gateway, Desktop client and DicomBrowser,Mango, R and RStudio, dcm2nigui, NiiStat Matlab toolbox, SPM12, Cat12, 3D Slicer, Paraview, AutoCAD, Anaconda, Gimias, MITK workbench, VTK, BrainStrom, Brainsuite, BioImage Suite, MIPAV, VeVo Labs, VeVoQuanto, Graph Prism, GenStat, SAS, SPSS, Blender, SQL Server Management studio,POV-Ray, Visual Studio 2017 Community Edition.
Linux - Ubuntu 16.04: - MATLAB 2018a, FileZilla, Fiji, ImageJ, SPM12, CAT12, 3D Slicer, Freesurfer, Aliza, AFNI, Advanced Normalization Tools: ANTs, Convert3d, DSI Studio, FSL, ITK-Snap, Mango, MRIConvert, MRIcroGL, MRIcron, MRTRIX3, Robust Brain Extraction (ROBEX), Virtual MRI, Paraview, MINC tool set, R and RStudio, Anaconda, fMRI Data Analysis Toolkit, DynamicBC toolkit, AMIDE, MIPAV, XNAT Desktop Client, DicomBrowser, DICOM Viewer, Visual Studio 2017 Community Edition.
| Windows 10, Ubuntu 16.04 |
| Sydney Mass Spectrometry, Core Research Facility | Windows 10: - MATLAB 2018b, Huygens 18.10, VIM 8.1, GIMP, Giphi, Excel and Word 2016, GenStat, Graph Prism, SPSS, SAS, Blender, Anaconda, R and RStudio, AutoCAD, SQL Server Management studio, Fiji, ImageJ, OpenChrom, FreeStyle, Foundation, Proteome Discoverer, Tracefinder, LipidSearch, MaxQuant, ProtienPilot, ProGenesis QI, MarkView, Protein Discoverer, NIST AMDIS, SCiLS Labs, FileZilla FTP, SQL Server Management studio, POV-Ray, Visual Studio 2017 Community Edition.
| Windows 10 |
| Sydney Microscopy & Microanalysis (SMM), Core Research Facility | Windows 10: - MATLAB 2018b, FileZilla, Huygens 18.10, VIM 8.1, GIMP, Giphi, Excel and Word 2016, GenStat, Graph Prism, SPSS, SAS, Blender, Anaconda, R and RStudio, AutoCAD, SQL Server Management studio, Fiji, ImageJ, AzTec, FlexNext, LAS X, Inca, Madcap, mambo, Manager data, Map sticker, Salsa, Spirical kikuchi, Tango, Twist, Avizo, IVAS, POV-Ray, Cyberduck, Visual Studio 2017 Community Edition.
Linux - Ubuntu 16.04 - Relion3, EMAN2, IMOD, Dynamo, FileZilla
| Windows 10 Ubuntu 16.04 |
| Sydney Cytometry, Core Research Facility | Windows 10: - MATLAB 2018b, FileZilla, Fiji, ImageJ, Huygens 18.10, VIM 8.1, GIMP, Giphi, Excel and Word 2016, GenStat, Graph Prism, SPSS, SAS, Blender, Anaconda, R and RStudio, AutoCAD, SQL Server Management studio, CellProfiler, CellProfiler-Analyst, HistoCat, Ilastik, MCDViewer, SPADE3, CytoScape, tSNE, KNIME, POV-Ray,bioconductor, Visual Studio 2017 Community Edition.
| Windows 10 |
| Westmead Research (SCHN-Kids Research and Cytometry) | Windows 10: - MATLAB 2018b,FileZilla, Fiji, ImageJ, Huygens 18.10, VIM 8.1, GIMP, Giphi, Excel and Word 2016, GenStat, Graph Prism, SPSS, SAS, Blender, Anaconda, R and RStudio, AutoCAD, SQL Server Management studio, CellProfiler, CellProfiler-Analyst, HistoCat, Ilastik, SPADE3, CytoScape, tSNE, KNIME, Ultimaker Cura (3D Printing), Filezilla,bioconductor, FlowJo, Visual Studio 2017 Community Edition.
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| Sydney Informatics Hub (SIH), Core Research Facility | Windows 10: - MATLAB 2018b, FileZilla, Fiji, ImageJ, Huygens 18.10, VIM 8.1, GIMP, Giphi, Excel and Word 2016, GenStat, Graph Prism, SPSS, SAS, Blender, Anaconda, R and RStudio, AutoCAD, SQL Server Management studio, POV-Ray, CytoScape, UGINE workbench, KNIME, bioconda, bioconductor, PathVisio (Bio Plugins), GenGIS (20+ Bio Plugins), GeWorkbench (50+ Bio Plugins), Ondex, Taverna Workbench, BLAST+, gbench (NCBI), NCBI toolkit, Cn3D, CD-tree, Fa2Cd, Sequin, BRB-Arraytools 4.6, BRB-CGHT tools, FLASH 1.2.11, CMake, Orange, Staden packages, CygWin (Includes Scientific packages), KNIME, Git, Cyberduck, Visual Studio 2017 Community Edition .
| Windows 10 |