For ICT configuration, see /wiki/spaces/RC/pages/960563231
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Project name can’t contain _ , this symbol is used to seperate the Project ID and Subject Name. Subject Name can contain any numbers of _ .
The Scan name will become the Session name on XNAT.
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Z: (Aquisiton) D: (Reconstruction)
D:\Data\[Study]\[Scan]\*
[Study] is [XNAT Project ID]_[Subject]
[Scan] is [Date]_[Other]
Metadata
Instrument Source | Logic | Config Source | XNAT Destination |
|---|---|---|---|
[Study] | [XNAT Project ID]_* | - | Project |
[Study] | *_[Subject] | Subject | |
[Scan] | - | - | Session |
- | - | TBD | [IID] |
- | - | TBD | [QCPID] |
[Scan] | [Date]_* | - | Date |
- | - | - | Time |
[Scan].log | …User: [Operator]… Not collecting this for now | - | Operator |
- | - | TBD | Scanner Name |
- | - | TBD | Scanner Type |
- | - | Sydney Imaging | Acquisition Site |
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Original structure | Note | XNAT Structure | XNAT File Type | |
|---|---|---|---|---|
[Scan].ct-sequence [Scan].mCT [Scan].parameters [Scan].log [Scan].comments [Scan]_left.png [Scan]_right.png [Scan]_top.png [Scan]_x-ray-left.png [Scan]_x-ray-right.png [Scan]_x-ray-top.png | [Scan].zip | uct | RAW | |
ct-data/calibration/[Stuff].smv ct-data/calibration/[stuff2]_dark.tif ct-data/calibration/[stuff2]_white.tif ct-data/calibration/geopar.cfg | calibration | |||
ct-data/proj_000_0_log.csv ct-data/proj_000_0_00_[NNN].tif | where NNN is the index | proj | ||
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Results/CT_[Scan]_80um.log Results/CT_[Scan]_80um.nii | Not maintaining folder structure | CT_[Scan]_80um.log CT_[Scan]_80um.nii | log NIFTI | RECON |