Refer to guides and get access to the following systems that are useful for neuroimaging analysis:
XNAT
Currently, all of the original MRI scans are located on XNAT. XNAT is used for the storage of raw scans, viewing scans, and downloading scans for pre-processing.
User guide: No current guides.
Access: require registration and access to Frontier project, log in via:
https://xnat.sydney.edu.au/app/template/Login.vm
2. ARGUS
Virtual research desktop. Frontier maintains a shared desktop that everyone within Frontier can use. You can use this to run programs that have a GUI aspect (e.g. fsleyes, mrview), or simply use it as a method to access Artemis via the terminal (for windows users).
User guide: Argus User Guide
Access: uniconnect.cloud.com
3. RDS
User guide:
Access: Requires dashr project
4. Artemis
All processing and analysis must be conducted on Artemis.
User guide:
Access: Requires dash project
This section will be useful for anyone who wants to get started on understanding the systems and neuroimaging processes used in FRONTIER. Refer to the following pages to access guides on:
For neuroimaging: basic knowledge of the terminal command line is required. Understanding control flow statements, e.g. ‘for-loops' is preferable but not necessary. You will also need to understand how to submit jobs on Artemis.