For ICT configuration, see /wiki/spaces/RC/pages/960563231
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The screenshot above is the acquisition control screen. The User field should always leave blank. The Study field should be filled with the XNAT Project ID and Subject Name in XNAT, e.g. 123_SubjectName.
Project name can’t contain _ , this symbol is used to seperate the Project ID and Subject Name.
The Scan name will become the Session name on XNAT.
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Z: (Aquisiton) D: (Reconstruction)
D:\Data\[Study]\[Scan]\*
[Study] is [XNAT Project ID]_[Subject]
[Scan] is [Date]_[Other]
Metadata
Instrument Source | Logic | Config Source | XNAT Destination |
|---|---|---|---|
[Study] | [XNAT Project ID]_* | - | Project |
[Study] | *_[Subject] | Subject | |
[Scan] | - | - | Session |
- | - | TBD | [IID] |
- | - | TBD | [QCPID] |
[Scan] | [Date]_* | - | Date |
- | - | - | Time |
[Scan].log | …User: [Operator]… Not collecting this for now | - | Operator |
- | - | TBD | Scanner Name |
- | - | TBD | Scanner Type |
- | - | Sydney Imaging | Acquisition Site |
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Original structure | Note | XNAT Structure | XNAT File Type | |
|---|---|---|---|---|
[Scan].ct-sequence [Scan].mCT [Scan].parameters [Scan].log [Scan].comments [Scan]_left.png [Scan]_right.png [Scan]_top.png [Scan]_x-ray-left.png [Scan]_x-ray-right.png [Scan]_x-ray-top.png | [Scan].zip | uct | RAW | |
ct-data/calibration/[Stuff].smv ct-data/calibration/[stuff2]_dark.tif ct-data/calibration/[stuff2]_white.tif ct-data/calibration/geopar.cfg | calibration | |||
ct-data/proj_000_0_log.csv ct-data/proj_000_0_00_[NNN].tif | where NNN is the index | proj | ||
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Results/CT_[Scan]_80um.log Results/CT_[Scan]_80um.nii | Not maintaining folder structure | CT_[Scan]_80um.log CT_[Scan]_80um.nii | log NIFTI | RECON |