/
Glass brain rotating animations

Attention: Confluence is not suitable for the storage of highly confidential data. Please ensure that any data classified as Highly Protected is stored using a more secure platform.
If you have any questions, please refer to the University's data classification guide or contact ict.askcyber@sydney.edu.au

Glass brain rotating animations

First, open your glass brain and tractography/relevant results files you wish to include in the animation.

image-20240429-031732.png

Play around with the track colour, thickness, opacity, and lighting until you are happy with the display.

image-20240429-033230.png

Next open the screen capture menu and change the rotation type to camera. If you would like the brain to rotate horizontally, change the value for the third axis to 1. Change the angle to 360 to achieve a 360° view of the brain. At the bottom of the menu, select how many frames you want. This will determine the size of the animation.

 

Preview the animation with the play button at the bottom to make sure you are happy with it. To save the screen captures you will need to select an output directory (in the “Output” section of the screen capture options), and give the image files a prefix. then you can reset the brain (by pressing R or the yellow reset arrow button) and press the record button (the red circle).

 

Each of the frames will then be saves as an individual file that you can combine together into an animation.

 

Related content

DWI & tractography preprocessing output check
DWI & tractography preprocessing output check
More like this
Argus Software List
Argus Software List
More like this
General Neuroimaging Process
General Neuroimaging Process
More like this
Overview of systems
Overview of systems
More like this
Manual editing using tkmedit (FreeSurfer v6.0 and below)
Manual editing using tkmedit (FreeSurfer v6.0 and below)
More like this
FreeSurfer
More like this