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Preprocessing Scripts

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You can find the job scripts and instructions for running the following pipelines at the links below:

  1. /wiki/spaces/FN/pages/2557411524

  2. /wiki/spaces/FN/pages/2558722126 (requires slightly more set up but will work better in most cases).

  3. DWI pre-processing with FastSurfer + Connectomics.

  4. /wiki/spaces/FN/pages/2556985575

** I need to add synb0 ref files set up + edit ref_path into these instructions. **

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