This section is ONLY relevant for the manual editing step. For full pre-processing steps, refer back to here.
Below is a previous guide from James - Note it uses the older versions of FreeSurfer (v6.0 and below).
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Continue with pre-processing step - qcache
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Run QCACHE.sh. This is quite quick (about 20mins).
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bash submit.sh QCache.sh |
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(outlined in the main section of manual pre-processing steps here).