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1. Download files from XNAT to local computerRDS/ARGUSArtemis
Raw image files (DICOM and niftiiNIfTI) of FRONTIER scans are currently indexed on XNAT. You will need to search and select the relevant scans and download them into . You should not download them onto your local computer or ARGUS. If you do download into ARGUS, please delete these scans as soon as they are uploaded to the RDS (step 2).XNAT guide, please instead follow the instructions found in the XNAT guide for downloading.
2. Transfer files from local computer/ARGUS to RDS
After downloading the scans onto your local computer or ARGUS, you will need to transfer them to RDS (secure storage). Remember to delete the scans from your local computer/ARGUS once this step has been completed.
Transferring between local computer and HPC.
3. Transfer files from RDS to ArtemisTransferring data between RDS and Artemis (/scratch)
Scans need to be copied into Artemis /scratch for processing/analysis . Note: but Artemis is NOT to be used for long term storage (as it is not secure/backed up). Transferring For long term storage, files should be saved to RDS.
Transferring data between HPC and RDS using dtq.4
This method can also be used to transfer files between 2 RDS projects.
3. Run processes on Artemis via job submission
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Visualising analysis using graphical login node.
54. Save data on RDS & delete files off Artemis.
After the project is completed, copy your files onto the RDS for long term storage and delete all files in Artemis to clear up space. To date, there is no simple way of transferring files from XNAT directly into Artemis/RDSYou can delete files as you usually do on a computer (e.g. right-click the file and click delete/remove), or you can use the rm command on the command line.