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#In the directory where you have saved the Dockerfile docker build Dockerfile-t trinity . #Then this particular Dockerfile can be interfaced/run like so sudo docker run --rm -v`pwd`:`pwd` trinityrnaseq/trinityrnaseqtrinity Trinity --seqType fq --single `pwd`/reads.fq.gz --max_memory 1G --CPU 4 --output `pwd`/trinity_out_dir |
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