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If there is variation, the scan has failed the tal check. Consult with your supervisor. It is likely that this scan will not be used for processing.
5. Conduct manual editing. Instruction on manual editing on old FreeSurfer versions (v6.0 and below) can be found here. Official instructions on manual editing using new FreeSurfer versions (v7.0 and above) can be found here, and here.
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Running whole pre-processing pipeline automatically
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